reprogramming(subset='full', path='datasets/reprogramming.h5ad', **kwargs)¶
Reprogramming of mouse embryonic fibroblasts to induced endoderm progenitors at 8 time points from [Morris18].
scRNA-seq dataset comprising 104,887 cell recorded using 10X Chromium and Dropseq [Macosko15] at 8 time points spanning days 0-28 past reprogramming initiation.
Contains raw spliced and un-spliced count data, low-dimensional embedding coordinates as well as clonal information from CellTagging [Morris18]. Moreover, contains the following
‘reprogramming_day’ - time-point information.
‘reprogramming’ - whether this clone is enriched for cells from successfully reprogrammed populations.
‘CellTagDN_XXk’ - CellTag from day N from the XXk cells
adata – Annotated data object.
- Return type
The dataset has approximately 1.5GiB and the subsetting is performed only locally after the full download.