cellrank.datasets.lung

cellrank.datasets.lung(path='datasets/lung_regeneration.h5ad', **kwargs)[source]

Regeneration of murine lung epithelial cells at 13 time points from [Lung20].

scRNA-seq dataset comprising 24,051 cells recorded using Dropseq [Macosko15] at 13 time points spanning days 2-15 past lung bleomycin injury. Data was filtered to remove control cells as well as later time points which are more spaced out. We wanted to focus on the densely sampled days where RNA velocity [Manno18] [Bergen20] can be used to predict the future cellular state.

Contains raw spliced and un-spliced count data, low-dimensional embedding coordinates as well as original cluster annotations.

Parameters
Returns

adata – Annotated data object.

Return type

anndata.AnnData

Examples