External API

This is a collection of external tools that are also accessible through CellRank. If you wish to contribute, please refer to our contributing guide.

Kernels

external.kernels.StationaryOTKernel(adata, g)

Stationary optimal transport kernel from [Zhang et al., 2021].

external.kernels.WOTKernel(adata[, …])

Waddington optimal transport kernel from [Schiebinger et al., 2019].

Estimators

Models