fit(n_lineages, keys=None, cluster_key=None, compute_absorption_probabilities=True, **kwargs)¶
Run the pipeline, computing the initial or terminal states and optionally the absorption probabilities.
It is equivalent to running:
compute_eigendecomposition(...) compute_terminal_states(...) compute_absorption_probabilities(...)
str]]) – Determines which initial or terminaltates to use by passing their names. Further, initial or terminal states can be combined. If e.g. the terminal states are [‘Neuronal_1’, ‘Neuronal_1’, ‘Astrocytes’, ‘OPC’], then passing
keys=['Neuronal_1, Neuronal_2', 'OPC']means that the two neuronal terminal states are treated as one and the ‘Astrocyte’ state is excluded.
Nothing, just makes available the following fields:
- Return type