cellrank.tl.estimators.GPCCA.compute_gdpt

GPCCA.compute_gdpt(n_components=10, key_added='gdpt_pseudotime', **kwargs)[source]

Compute generalized Diffusion pseudotime from [Haghverdi16] using the real Schur decomposition.

Parameters
  • n_components (int) – Number of real Schur vectors to consider.

  • key_added (str) – Key in adata .obs where to save the pseudotime.

  • **kwargs – Keyword arguments for cellrank.tl.GPCCA.compute_schur() if Schur decomposition is not found.

Returns

Nothing, just updates adata .obs[key_added] with the computed pseudotime.

Return type

None