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CellRank 1.5.1 documentation
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General

  • Installation
  • API
    • Kernels
      • cellrank.kernels.VelocityKernel
      • cellrank.kernels.ConnectivityKernel
      • cellrank.kernels.PseudotimeKernel
      • cellrank.kernels.CytoTRACEKernel
      • cellrank.kernels.TransportMapKernel
      • cellrank.kernels.PrecomputedKernel
      • cellrank.external.kernels.StationaryOTKernel
    • Estimators
      • cellrank.estimators.GPCCA
      • cellrank.estimators.CFLARE
    • Models
      • cellrank.models.GAM
      • cellrank.models.GAMR
      • cellrank.models.SKLearnModel
    • Plotting
      • cellrank.pl.circular_projection
      • cellrank.pl.gene_trends
      • cellrank.pl.log_odds
      • cellrank.pl.heatmap
      • cellrank.pl.cluster_trends
      • cellrank.pl.aggregate_fate_probabilities
    • Datasets
      • cellrank.datasets.pancreas
      • cellrank.datasets.lung
      • cellrank.datasets.reprogramming_morris
      • cellrank.datasets.reprogramming_schiebinger
      • cellrank.datasets.zebrafish
      • cellrank.datasets.pancreas_preprocessed
      • cellrank.datasets.bone_marrow
    • Developer API
  • Release Notes
    • CellRank dev (2023-05-25)
    • CellRank 1.5.1 (2022-01-13)
    • CellRank 1.5.0 (2021-09-13)
    • CellRank 1.4.0 (2021-06-30)
    • CellRank 1.3.1 (2021-04-09)
    • CellRank 1.3.0 (2021-03-29)
    • CellRank 1.2.0 (2021-02-02)
    • CellRank 1.1.0 (2020-11-17)
    • CellRank 1.0.0 (2020-10-17)
  • Contributing guide
  • References

Gallery

  • Tutorials
    • CellRank basics
    • CellRank meets pseudotime
    • CellRank meets CytoTRACE
    • Creating a new kernel
  • Examples

About

  • About CellRank
  • How to cite us
  • Team
  • GitHub
  • Discourse
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Tutorials#

Under construction.

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CellRank basics

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CellRank meets pseudotime

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CellRank meets CytoTRACE

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Creating a new kernel

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CellRank basics
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Copyright © 2023, Marius Lange, Michal Klein, Philipp Weiler
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