cellrank.datasets.pancreas

cellrank.datasets.pancreas(path='datasets/endocrinogenesis_day15.5.h5ad', **kwargs)

Development of the murine pancreas at E15.5 from [Bastidas-Ponce et al., 2019].

scRNA-seq dataset comprising 2531 cells recorded using 10x Chromium in a single time point. Data was filtered to remove heavily cycling populations and to focus on the late stages of endocrinogenesis.

Contains raw spliced and un-spliced count data, low-dimensional embedding coordinates as well as original cluster annotations.

Parameters

• path (Union[str, Path]) – Path where to save the dataset.

• **kwargs – Keyword arguments for scanpy.read().

Return type

AnnData

Returns

adata : anndata.AnnData Annotated data object.