- cellrank.datasets.reprogramming_morris(subset=ReprogrammingSubset.FULL, path='datasets/reprogramming_morris.h5ad', **kwargs)¶
Reprogramming of mouse embryonic fibroblasts to induced endoderm progenitors at 8 time points from [Biddy et al., 2018].
scRNA-seq dataset comprising 104 887 cell recorded using 10X Chromium and Dropseq [Macosko et al., 2015] at 8 time points spanning days 0-28 past reprogramming initiation.
Contains raw spliced and un-spliced count data, low-dimensional embedding coordinates as well as clonal information from CellTagging [Biddy et al., 2018]. Moreover, it contains the following
‘reprogramming_day’ - time-point information.
‘reprogramming’ - whether this clone is enriched for cells from successfully reprogrammed populations.
‘CellTagDN_XXk’ - CellTag from day N from the XXk cells
- Return type
anndata.AnnDataAnnotated data object.
The dataset has approximately 1.5GiB and the subsetting is performed locally after the full download.