cellrank.datasets.reprogramming_schiebinger
- cellrank.datasets.reprogramming_schiebinger(path='datasets/reprogramming_schiebinger.h5ad', **kwargs)[source]
Reprogramming of mouse embryonic fibroblasts to induced pluripotent stem cells at 39 time points from [Schiebinger et al., 2019].
scRNA-seq dataset comprising 236 285 cell recorded using 10X Chromium at 39 time points spanning days 0-18 past reprogramming initiation.
Contains total-counts normalized, log-transformed counts and low-dimensional embedding coordinates (force-directed). Moreover, it contains the following
anndata.AnnData.obs
annotations:‘day’ - time-point information.
‘serum’/’2i’ - whether this cell comes from the serum/2i condition.
‘cell_sets’ - cluster labels.
- Parameters
**kwargs – Keyword arguments for
scanpy.read()
.
- Return type
- Returns
adata :
anndata.AnnData
Annotated data object.
Notes
The dataset has approximately 1.4GiB.