cellrank.datasets.zebrafish

cellrank.datasets.zebrafish(path='datasets/zebrafish.h5ad', **kwargs)

Zebrafish embryogenesis assayed using drop-seq, restricted to the axial mesoderm lineage from [Farrell et al., 2018].

scRNA-seq time-series dataset comprising 2434 cells which contains 12 time-points spanning 3.3-12 hours past fertilization.

Parameters

• path (Union[str, Path]) – Path where to save the dataset.

• **kwargs – Keyword arguments for scanpy.read().

Return type

AnnData

Returns

adata : anndata.AnnData Annotated data object.