cellrank.pl.lineage_drivers

cellrank.pl.lineage_drivers(adata, lineage, backward=False, n_genes=8, ncols=None, use_raw=False, title_fmt='{gene} qval={qval:.4e}', **kwargs)[source]

Plot lineage drivers that were uncovered using cellrank.tl.lineage_drivers().

Parameters

adata (anndata.AnnData) – Annotated data object.
backward (bool) – Direction of the process.
lineage (str) – Lineage for which to plot the driver genes.
n_genes (int) – Top most correlated genes to plot.
ncols (Optional[int]) – Number of columns.
use_raw (bool) – Whether to access in anndata.AnnData.raw or not.
title_fmt (str) – Title format. Can include {gene}, {pval}, {qval} or {corr}, which will be substituted with the actual values.
figsize – Size of the figure.
dpi – Dots per inch.
save – Filename where to save the plot.
kwargs (Any) – Keyword arguments for scvelo.pl.scatter().

Return type

None

Returns

Nothing, just plots the figure. Optionally saves it based on save.

Examples