cellrank.pl.lineage_drivers
- cellrank.pl.lineage_drivers(adata, lineage, backward=False, n_genes=8, ncols=None, use_raw=False, title_fmt='{gene} qval={qval:.4e}', **kwargs)[source]
Plot lineage drivers that were uncovered using
cellrank.tl.lineage_drivers()
.- Parameters
adata (
anndata.AnnData
) – Annotated data object.backward (
bool
) – Direction of the process.lineage (
str
) – Lineage for which to plot the driver genes.n_genes (
int
) – Top most correlated genes to plot.use_raw (
bool
) – Whether to access inanndata.AnnData.raw
or not.title_fmt (
str
) – Title format. Can include {gene}, {pval}, {qval} or {corr}, which will be substituted with the actual values.figsize – Size of the figure.
dpi – Dots per inch.
save – Filename where to save the plot.
kwargs (
Any
) – Keyword arguments forscvelo.pl.scatter()
.
- Return type
- Returns
Nothing, just plots the figure. Optionally saves it based on
save
.