cellrank.read

cellrank.read(path, key=None, read_callback=<function read>, **kwargs)

Read file and return anndata.AnnData object.

Parameters

• path (Union[Path, str]) – Path to the annotated data object.

• key (Optional[str]) – Key in adata.obsm where the cellrank.tl.Lineage is stored. If None, it is determined automatically.

• read_callback (Callable) – Function that actually reads the anndata.AnnData object, such as scvelo.read() (default) or scanpy.read().

• kwargs – Keyword arguments for read_callback.

Returns

adata – Annotated data object.

Return type

anndata.AnnData

Examples