cellrank.tl.estimators.GPCCA.plot_lineage_drivers

GPCCA.plot_lineage_drivers(lineage, n_genes=8, ncols=None, use_raw=False, title_fmt='{gene} qval={qval:.4e}', figsize=None, dpi=None, save=None, **kwargs)

Plot lineage drivers discovered by compute_lineage_drivers().

Parameters

  • lineage (str) – Lineage for which to plot the driver genes.

  • n_genes (int) – Top most correlated genes to plot.

  • ncols (Optional[int]) – Number of columns.

  • use_raw (bool) – Whether to access in anndata.AnnData.raw or not.

  • title_fmt (str) – Title format. Can include {gene}, {pval}, {qval} or {corr}, which will be substituted with the actual values.

  • figsize (Optional[Tuple[float, float]]) – Size of the figure.

  • dpi (Optional[int]) – Dots per inch.

  • save (Union[str, Path, None]) – Filename where to save the plot.

  • kwargs (Any) – Keyword arguments for scvelo.pl.scatter().

Return type

None

Returns

Nothing, just plots the figure. Optionally saves it based on save.