Examples

This section contains various code snippets that demonstrate cellrank’s usage.

Kernels

Below are examples of cellrank.tl.kernels.Kernel.

Plot projection — Plot projection

Plot random walks — Plot random walks

Kernel tricks — Kernel tricks

Estimators

Below are examples of cellrank.tl.estimators.GPCCA and cellrank.tl.estimators.CFLARE.

Compute macrostates — Compute macrostates

Compute coarse-grained transition matrix — Compute coarse-grained transition matrix

Compute terminal states using GPCCA — Compute terminal states using GPCCA

Compute absorption probabilities — Compute absorption probabilities

Compute potential lineage drivers — Compute potential lineage drivers

Other

Below are examples not covered in other sections, such as cellrank.tl.Lineage or cellrank.ul.models.BaseModel.

Fit models and plot gene trends — Fit models and plot gene trends

Lineage tricks — Lineage tricks

Gallery generated by Sphinx-Gallery

Read the Docs v: stable

Versions: latest; stable

Downloads: html

On Read the Docs: Project Home; Builds