cellrank.datasets.zebrafish#

cellrank.datasets.zebrafish(path='datasets/zebrafish.h5ad', **kwargs)[source]#

Zebrafish embryogenesis assayed using drop-seq from [Farrell et al., 2018].

sc-RNA-seq time-series dataset, restricted to the axial mesoderm lineage, comprising of 2434 cells which contains 12 time-points spanning 3.3-12 hours past fertilization.

Parameters:

  • path (Union[str, Path]) – Path where to save the dataset.

  • kwargs (Any) – Keyword arguments for read().

Return type:

AnnData

Returns:

: Annotated data object.