Release Notes

Version 1.0

1.2.0 2021-02-02

This release includes:

Additions

  • Completely refactored the underlying code base of GPCCA and set it up as it’s own package called pyGPCCA with documentation and an example. Going forwards, this will ensure that one of the “engines” of CellRank is also easy to maintain to extend. Further, this will make CellRank’s installation more convenient by not needing to vendorize additional dependencies PR 472.

  • Add cellrank.pl.circular_projection() visualizing computed fate probabilities as done in [Velten17], see Plot circular embedding. PR 459.

  • Allow legends not to be plotted by passing legend_loc="none", as done in scVelo PR 470.

Bugfixes

1.1.0 2020-11-17

This release includes:

Additions

Bugfixes

  • Fix not vendorizing correct msmtools which sometimes caused densification of a sparse matrix.

  • Bump scanpy version requirement to 1.6 to fix plotting PR 444.

1.0.0 2020-10-17

1.0.0-rc.11 2020-09-25

1.0.0-rc.0 2020-07-15

1.0.0-b.8 2020-07-12

  • Add installation options for PETSc and SLEPc

  • Add iterative solver for absorption proabilities

  • Add minor cellrank.tl.Lineage improvements

  • Fix docstring issues

1.0.0-b.2 2020-07-02

  • Fix installation by including future-fstrings.

1.0.0-b.1 2020-07-02

  • Initial beta pre-release.