CellRank 1.5.0 (2021-09-13)

Features

Bugfixes

Deprecations (in next major release)

  • Deprecate cellrank.tl, including the high level API and rename cellrank.ul.models to cellrank.models. #695

Miscellaneous

  • Fix many test warnings. #704

  • Speed-up testing by not using stochastic mode in cellrank.kernels.VelocityKernel where not necessary. #705

  • Enable tox in CI. #713

  • Update deployment CI and CONTRIBUTING.rst based on a new branching structure. #725

  • Add Python 3.9 CI testing. #730

Documentation

  • Add Google Colab links for tutorials. #707

  • Allow towncrier to generate bleeding-edge development notes. #712

  • Fix docstrings and use typed returns. #743