Plotting

Plotting functions visualize CellRank outputs computed using kernels, estimators or models.

pl.circular_projection(adata, keys[, ...])	Visualize fate probabilities in a circular embedding [Jaitin et al., 2014, Velten et al., 2017].
pl.gene_trends(adata, model, genes[, ...])	Plot gene expression trends along lineages.
pl.log_odds(adata, lineage_1[, lineage_2, ...])	Plot log-odds ratio between trajectories.
pl.heatmap(adata, model, genes[, lineages, ...])	Plot a heatmap of smoothed gene expression along specified lineages.
pl.cluster_trends(adata, model, genes, lineage)	Cluster and plot gene expression trends within a lineage.
pl.aggregate_absorption_probabilities(adata)	Plot aggregate lineage probabilities at a cluster level.