Plotting

Plotting functions visualize CellRank outputs computed using kernels, estimators or models.

pl.circular_projection(adata, keys[, ...])

Visualize fate probabilities in a circular embedding [Jaitin et al., 2014, Velten et al., 2017].

pl.gene_trends(adata, model, genes, time_key)

Plot gene expression trends along lineages.

pl.log_odds(adata, lineage_1[, lineage_2, ...])

Plot log-odds ratio between trajectories.

pl.heatmap(adata, model, genes, time_key[, ...])

Plot a heatmap of smoothed gene expression along specified lineages.

pl.cluster_trends(adata, model, genes, ...)

Cluster and plot gene expression trends within a lineage.

pl.aggregate_fate_probabilities(adata[, ...])

Plot aggregate lineage probabilities at a cluster level.