Plotting#

Plotting functions visualize CellRank outputs computed using kernels, estimators or models.

pl.circular_projection(adata, keys[, ...])

Plot absorption probabilities on a circular embedding [Velten et al., 2017].

pl.gene_trends(adata, model, genes[, ...])

Plot gene expression trends along lineages.

pl.log_odds(adata, lineage_1[, lineage_2, ...])

Plot log-odds ratio between lineages.

pl.heatmap(adata, model, genes[, lineages, ...])

Plot a heatmap of smoothed gene expression along specified lineages.

pl.cluster_trends(adata, model, genes, lineage)

Cluster and plot gene expression trends within a lineage.

pl.aggregate_absorption_probabilities(adata)

Plot aggregate lineage probabilities at a cluster level.