Release Notes

Version 1.0

1.0.0 2020-10-17

• Fix bug when subsetting cellrank.tl.Lineage

• Add renaming terminal states cellrank.tl.estimators.BaseEstimator.rename_terminal_states()

• Enable negative binomial distribution for cellrank.ul.models.GAMR

• Remove previously deprecated functions

• Add cellrank.ul.models.FailedModel inspired by the maybe monad

• Allow returning models when doing bulk fitting

• Add transpose parameter for cellrank.pl.gene_trends()

• Various other minor bugfixes

1.0.0-rc.11 2020-09-25

• Rename metastable states to macrostates

• Rename final states to terminal states

• Fix pickling if cellrank.tl.estimators.BaseEstimator

• Fix various color bugs

• Improve cellrank.tl.kernels.PrecomputedKernel

• Update gallery

• Other various minor changes

1.0.0-rc.0 2020-07-15

• Fix pickling of cellrank.tl.Lineage improvements

• Add additional options to cellrank.pl.heatmap()

• Updated documentation

1.0.0-b.8 2020-07-12

• Add installation options for PETSc and SLEPc

• Add iterative solver for absorption proabilities

• Add minor cellrank.tl.Lineage improvements

• Fix docstring issues

1.0.0-b.2 2020-07-02

• Fix installation by including future-fstrings.

1.0.0-b.1 2020-07-02

• Initial beta pre-release.