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CellRank 1.5.1 documentation
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General

  • Installation
  • API
    • cellrank.kernels.VelocityKernel
    • cellrank.kernels.ConnectivityKernel
    • cellrank.kernels.PseudotimeKernel
    • cellrank.kernels.CytoTRACEKernel
    • cellrank.kernels.PrecomputedKernel
    • cellrank.external.kernels.StationaryOTKernel
    • cellrank.external.kernels.WOTKernel
    • cellrank.estimators.GPCCA
    • cellrank.estimators.CFLARE
    • cellrank.pl.circular_projection
    • cellrank.pl.gene_trends
    • cellrank.pl.log_odds
    • cellrank.pl.heatmap
    • cellrank.pl.cluster_trends
    • cellrank.pl.aggregate_absorption_probabilities
    • cellrank.models.GAM
    • cellrank.models.GAMR
    • cellrank.models.SKLearnModel
    • cellrank.datasets.pancreas
    • cellrank.datasets.lung
    • cellrank.datasets.reprogramming_morris
    • cellrank.datasets.reprogramming_schiebinger
    • cellrank.datasets.zebrafish
    • cellrank.datasets.pancreas_preprocessed
    • cellrank.datasets.bone_marrow
  • Developer API
  • Release Notes
    • CellRank dev (2022-06-29)
    • CellRank 1.5.1 (2022-01-13)
    • CellRank 1.5.0 (2021-09-13)
    • CellRank 1.4.0 (2021-06-30)
    • CellRank 1.3.1 (2021-04-09)
    • CellRank 1.3.0 (2021-03-29)
    • CellRank 1.2.0 (2021-02-02)
    • CellRank 1.1.0 (2020-11-17)
    • CellRank 1.0.0 (2020-10-17)
  • Contributing
  • References
  • GitHub
  • Discourse

Gallery

  • Tutorials
    • CellRank basics
    • Kernels and estimators
    • CellRank beyond RNA velocity
    • Time series datasets
    • Creating a new kernel
  • Examples
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Release Notes#

  • CellRank dev (2022-06-29)
    • Features
    • Bugfixes
    • Miscellaneous
    • Documentation
  • CellRank 1.5.1 (2022-01-13)
  • CellRank 1.5.0 (2021-09-13)
    • Features
    • Bugfixes
    • Deprecations (in next major release)
    • Miscellaneous
    • Documentation
  • CellRank 1.4.0 (2021-06-30)
    • Bugfixes
    • Features
  • CellRank 1.3.1 (2021-04-09)
    • Bugfixes
  • CellRank 1.3.0 (2021-03-29)
    • Bugfixes
    • Features
  • CellRank 1.2.0 (2021-02-02)
    • Bugfixes
    • Features
  • CellRank 1.1.0 (2020-11-17)
    • Bugfixes
    • Features
  • CellRank 1.0.0 (2020-10-17)
    • Bugfixes
    • Features
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CellRank dev (2022-06-29)
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Copyright © 2022, Marius Lange, Michal Klein, Philipp Weiler
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Contents
  • Release Notes