Import CellRank as:
import cellrank as cr
CellRank has a modular API, organized around kernels and estimators:
cellrank.kernelscompute cell-cell transition matrices using various input data modalities, including RNA velocity, any pseudotime, a developmental potential, experimental time points, and more.
cellrank.estimatorsuse the cell-cell transition matrix to derive insights about cellular dynamics, for example, they compute initial and terminal states, fate probabilities, and driver genes. Our recommended estimator is the