Import CellRank as:
import cellrank as cr
interacting directly with the kernels defined in
cellrank.kernels.Kerneland the estimators
cellrank.estimators.CFLARE. The division into kernels and estimators ensures that CellRank in broadly applicable, no matter how you have computed your transition matrix. See our Kernels and estimators tutorial.
Additionally, there is a set of plotting functions which can be used downstream of either analysis mode.
The utilities are mainly for fitting continuous models to gene expression data
and are utilized in some of the plotting functions, like