cellrank.datasets.bone_marrow

cellrank.datasets.bone_marrow(path='datasets/bone_marrow.h5ad', **kwargs)[source]

sc-RNA-seq dataset early human hematopoiesis (CD34+ bone marrow cells) assayed using 10X Chromium.

This dataset contains raw spliced and unspliced counts estimated using velocyto [La Manno et al., 2018]. Furthermore, the dataset also contains a precomputed Palantir pseudotime [Setty et al., 2019].

Parameters:

  • path (Union[str, Path]) – Path where to save the dataset.

  • kwargs (Any) – Keyword arguments for read().

Return type:

AnnData

Returns:

: Annotated data object.