CellRank comes with a number of datasets that make it easy for you to get started. Our dataset API enables you to automatically download these datasets; see our tutorials.

datasets.pancreas([path, kind])

Development of the murine pancreas at E15.5 from [Bastidas-Ponce et al., 2019].


Regeneration of murine lung epithelial cells at 13 time points from [Strunz et al., 2020].

datasets.reprogramming_morris([path, subset])

Reprogramming of mouse embryonic fibroblasts to induced endoderm progenitors from [Biddy et al., 2018].

datasets.reprogramming_schiebinger([path, ...])

Reprogramming of mouse embryonic fibroblasts to induced pluripotent stem cells from [Schiebinger et al., 2019].


Zebrafish embryogenesis assayed using drop-seq from [Farrell et al., 2018].


sc-RNA-seq dataset early human hematopoiesis (CD34+ bone marrow cells) assayed using 10X Chromium.