Datasets#

CellRank comes with a number of datasets that make it easy for you to get started. Our dataset API enables you to automatically download these datasets; see our tutorials for examples.

datasets.pancreas([path])

Development of the murine pancreas at E15.5 from [Bastidas-Ponce et al., 2019].

datasets.lung([path])

Regeneration of murine lung epithelial cells at 13 time points from [Strunz et al., 2020].

datasets.reprogramming_morris([subset, path])

Reprogramming of mouse embryonic fibroblasts to induced endoderm progenitors at 8 time points from [Biddy et al., 2018].

datasets.reprogramming_schiebinger([path, ...])

Reprogramming of mouse embryonic fibroblasts to induced pluripotent stem cells at 39 time points from [Schiebinger et al., 2019].

datasets.zebrafish([path])

Zebrafish embryogenesis assayed using drop-seq, restricted to the axial mesoderm lineage from [Farrell et al., 2018].

datasets.pancreas_preprocessed([path])

Development of the murine pancreas at E15.5 from [Bastidas-Ponce et al., 2019], preprocessed according to the basic tutorial.

datasets.bone_marrow([path])

sc-RNA-seq dataset early human hematopoiesis (CD34+ bone marrow cells) assayed using 10X Chromium.