Estimators#

Estimators enable quantitative analysis of Markov transition matrices computed using CellRank kernels, including automatic detection of initial and terminal states, and computation of fate probabilities.

estimators.GPCCA(object, **kwargs)

Generalized Perron Cluster Cluster Analysis [Reuter et al., 2018] as implemented in pyGPCCA.

estimators.CFLARE(object, **kwargs)

Compute the initial/terminal states of a Markov chain via spectral heuristics.