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cellrank documentation
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General

  • Installation
  • API
    • Kernels
      • cellrank.kernels.VelocityKernel
      • cellrank.kernels.ConnectivityKernel
      • cellrank.kernels.PseudotimeKernel
      • cellrank.kernels.CytoTRACEKernel
      • cellrank.kernels.RealTimeKernel
      • cellrank.kernels.PrecomputedKernel
    • Estimators
      • cellrank.estimators.GPCCA
      • cellrank.estimators.CFLARE
    • Models
      • cellrank.models.GAM
      • cellrank.models.GAMR
      • cellrank.models.SKLearnModel
    • Plotting
      • cellrank.pl.circular_projection
      • cellrank.pl.gene_trends
      • cellrank.pl.log_odds
      • cellrank.pl.heatmap
      • cellrank.pl.cluster_trends
      • cellrank.pl.aggregate_fate_probabilities
    • Datasets
      • cellrank.datasets.pancreas
      • cellrank.datasets.lung
      • cellrank.datasets.reprogramming_morris
      • cellrank.datasets.reprogramming_schiebinger
      • cellrank.datasets.zebrafish
      • cellrank.datasets.bone_marrow
    • Developer API
  • Tutorials
    • General
      • Getting Started with CellRank
    • Kernels
      • CellRank Meets RNA Velocity
      • CellRank Meets Pseudotime
      • CellRank Meets CytoTRACE
      • CellRank Meets Experimental Time
    • Estimators
      • Computing Initial and Terminal States
      • Estimating Fate Probabilities and Driver Genes
      • Visualizing and Clustering Gene Expression Trends
  • Release Notes
    • CellRank dev (2023-06-08)
    • CellRank 1.5.1 (2022-01-13)
    • CellRank 1.5.0 (2021-09-13)
    • CellRank 1.4.0 (2021-06-30)
    • CellRank 1.3.1 (2021-04-09)
    • CellRank 1.3.0 (2021-03-29)
    • CellRank 1.2.0 (2021-02-02)
    • CellRank 1.1.0 (2020-11-17)
    • CellRank 1.0.0 (2020-10-17)
  • Contributing Guide
  • References

About

  • About CellRank
  • Moving to CellRank 2
  • Citing CellRank
  • Team
  • GitHub
  • Discourse
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TutorialsΒΆ

  • General
    • Getting Started with CellRank
  • Kernels
    • CellRank Meets RNA Velocity
    • CellRank Meets Pseudotime
    • CellRank Meets CytoTRACE
    • CellRank Meets Experimental Time
  • Estimators
    • Computing Initial and Terminal States
    • Estimating Fate Probabilities and Driver Genes
    • Visualizing and Clustering Gene Expression Trends
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