CellRank 1.0.0 (2020-10-17)

Bugfixes

  • Fix a bug when subsetting cellrank.tl.Lineage

  • Remove previously deprecated functions

Features

  • Add renaming terminal states cellrank.tl.estimators.BaseEstimator.rename_terminal_states()

  • Enable negative binomial distribution for cellrank.ul.models.GAMR

  • Add cellrank.ul.models.FailedModel inspired by the maybe monad

  • Allow returning models when doing bulk fitting

  • Add transpose parameter for cellrank.pl.gene_trends()